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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
44
ATAC-seq
14
ChIP-seq
2
single cell RNA-seq
Assay category
56
Transcription
44
DNA accessibility
14
DNA binding
Target of assay
20
histone
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
6
October, 2019
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
Available data
79
bam
62
bigWig
56
tsv
53
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
4
bed bed3+
bed broadPeak
4
bigBed broadPeak
Organism
114
Homo sapiens
Biosample type
66
cell line
48
tissue
Organ
780
pancreas
629
liver
579
connective tissue
445
adipose tissue
400
epithelium
241
heart
235
kidney
159
bone element
140
vasculature
139
blood vessel
114
artery
68
blood
68
bodily fluid
53
eye
46
brain
32
limb
25
embryo
20
lung
20
musculature of body
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
114
AMP
Genome assembly (visualization)
101
GRCh38
66
hg19
Lab
114
AMP-T2D consortium
files.file_type!
bed broadPeak
target.investigated_as!
histone modification
month_released!
July, 2019
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
35
3
tibial artery
1
1
5
pulmonary artery
2
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