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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
9
ChIP-seq
1
DNase-seq
1
FAIRE-seq
Assay category
66
DNA accessibility
9
DNA binding
Target of assay
30
histone
histone modification
15
broad histone mark
15
narrow histone mark
9
transcription factor
7
recombinant protein
2
RNA binding protein
Date released
64
August, 2021
8
October, 2019
1
July, 2019
1
June, 2019
1
May, 2019
Available data
153
bed narrowPeak
114
bam
101
bigWig
82
bigBed narrowPeak
78
bed bed3+
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
24
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
75
Homo sapiens
Biosample type
65
tissue
8
cell line
2
primary cell
Organ
315
liver
80
pancreas
75
kidney
64
heart
54
blood vessel
54
vasculature
53
blood
53
bodily fluid
50
artery
45
epithelium
31
connective tissue
28
eye
9
adipose tissue
8
bone element
8
limb
8
skeleton
7
spleen
3
embryo
1
brain
1
nerve
1
vein
Project
75
AMP
Genome assembly (visualization)
74
GRCh38
11
hg19
Lab
64
Katalin Susztak, Upenn
11
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
files.file_type!
bed broadPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
75 results
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ATAC-seq
ChIP-seq
DNase-seq
FAIRE-seq
tissue
kidney
64
1
cell line
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
primary cell
epithelial cell of proximal tubule
1
kidney epithelial cell
1
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