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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
Assay category
317
DNA binding
Target of assay
317
transcription factor
89
recombinant protein
83
control
61
RNA binding protein
26
chromatin remodeller
24
histone
24
histone modification
13
narrow histone mark
11
broad histone mark
3
nucleotide modification
1
other context
1
other post-translational modification
Date released
197
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
11
August, 2021
7
October, 2019
5
February, 2021
1
November, 2019
Available data
356
bigWig
352
bed narrowPeak
349
bam
337
fastq
328
bigBed narrowPeak
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
317
Homo sapiens
Biosample type
317
cell line
89
tissue
49
in vitro differentiated cells
5
primary cell
Organ
253
liver
51
blood
51
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
317
AMP
Genome assembly (visualization)
308
hg19
277
GRCh38
Lab
306
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
317 results
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ChIP-seq
cell line
HepG2
253
GM12878
51
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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