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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
70
single cell RNA-seq
10
ATAC-seq
Assay category
146
Transcription
10
DNA accessibility
Date released
33
April, 2018
33
July, 2018
26
February, 2021
26
September, 2018
7
August, 2020
6
May, 2021
5
December, 2019
5
July, 2019
3
August, 2018
3
October, 2019
3
September, 2020
2
March, 2020
2
October, 2018
1
June, 2018
1
November, 2019
Available data
195
bigWig
187
bam
146
tsv
126
fastq
bed narrowPeak
39
bigBed narrowPeak
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
Organism
156
Homo sapiens
Biosample type
120
primary cell
34
cell line
2
in vitro differentiated cells
Organ
477
connective tissue
424
pancreas
401
adipose tissue
163
liver
156
epithelium
76
heart
59
blood vessel
59
vasculature
58
bone element
54
artery
23
kidney
14
brain
14
embryo
7
musculature of body
5
limb
4
nerve
2
spleen
1
pericardium
Project
144
AMP
10
HPAP
2
T1D
Genome assembly (visualization)
162
hg19
156
GRCh38
Lab
146
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
35
inconsistent ontology term
files.file_type!
bed narrowPeak
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
156 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
primary cell
pancreatic alpha cell
10
12
7
pancreatic beta cell
10
12
3
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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