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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
6
WGBS
3
small RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
DNA binding
6
DNA methylation
2
DNA accessibility
Date released
386
February, 2021
12
July, 2019
6
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
406
bigWig
405
bam
401
tsv
7
fastq
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
bigBed broadPeak
1
bedpe bed3+
Organism
411
Homo sapiens
Biosample type
409
tissue
2
primary cell
1
in vitro differentiated cells
Organ
654
pancreas
514
connective tissue
412
adipose tissue
341
epithelium
211
liver
182
heart
158
kidney
151
bone element
76
vasculature
75
blood vessel
58
artery
35
brain
25
eye
24
musculature of body
20
lung
15
embryo
12
limb
9
blood
9
bodily fluid
8
skeleton
5
nerve
3
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
412
AMP
Genome assembly (visualization)
401
GRCh38
401
hg19
Lab
412
AMP-T2D consortium
files.file_type!
bed narrowPeak
bigBed broadPeak
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
412 results
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total RNA-seq
WGBS
small RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
2
1
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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