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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
174
single cell RNA-seq
87
RNA microarray
52
ATAC-seq
28
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1227
Transcription
DNA binding
81
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
537
February, 2021
165
August, 2021
143
May, 2020
120
July, 2018
104
August, 2017
70
July, 2019
47
September, 2023
41
October, 2019
40
May, 2021
37
March, 2020
32
February, 2023
28
May, 2022
25
February, 2020
20
November, 2019
19
April, 2020
15
May, 2023
8
January, 2021
6
April, 2018
6
November, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
October, 2017
1
August, 2022
Available data
1185
bam
1157
bigWig
1075
tsv
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1478
Homo sapiens
Biosample type
1480
tissue
740
primary cell
174
in vitro differentiated cells
166
cell line
7
stem cell
Organ
467
connective tissue
409
adipose tissue
338
pancreas
182
liver
150
bone element
139
kidney
124
heart
28
brain
24
eye
21
musculature of body
20
lung
17
blood vessel
17
vasculature
12
limb
8
skeleton
5
nerve
4
artery
3
epithelium
3
spleen
2
intestine
2
thymus
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1385
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
952
hg19
950
GRCh38
Lab
1270
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
files.file_type!
bed narrowPeak
assay_slims!
DNA binding
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
1480 results
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total RNA-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
298
31
7
4
3
1
4
liver
167
1
3
1
1
1
1
kidney
49
64
11
6
1
1
bone element
84
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