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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Date released
10
July, 2019
5
March, 2020
4
August, 2017
2
February, 2020
2
May, 2022
1
January, 2018
Available data
41
bigWig
40
bam
34
bed bed3+
33
bed broadPeak
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
24
Homo sapiens
Biosample type
21
tissue
3
primary cell
Organ
654
pancreas
514
connective tissue
412
adipose tissue
341
epithelium
211
liver
182
heart
158
kidney
151
bone element
76
vasculature
75
blood vessel
58
artery
35
brain
25
eye
24
musculature of body
20
lung
15
embryo
12
limb
blood
9
bodily fluid
8
skeleton
5
nerve
3
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
13
hg19
7
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed narrowPeak
assay_slims!
DNA binding
organ_slims!
blood
BIOSAMPLE
ASSAY
24 results
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Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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