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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
Assay category
479
Transcription
99
DNA accessibility
78
DNA binding
53
DNA methylation
9
3D chromatin structure
Target of assay
48
control
24
histone
24
histone modification
14
narrow histone mark
10
broad histone mark
6
transcription factor
1
RNA binding protein
Date released
50
August, 2017
11
October, 2018
7
October, 2019
6
September, 2017
2
November, 2019
1
May, 2019
1
May, 2021
Available data
198
bam
161
bigWig
147
fastq
bed narrowPeak
59
bigBed narrowPeak
21
bed bed3+
19
tagAlign
12
bed broadPeak
Organism
77
Homo sapiens
Biosample type
44
tissue
24
primary cell
9
cell line
1
in vitro differentiated cells
Organ
139
liver
95
connective tissue
78
pancreas
66
adipose tissue
48
brain
32
epithelium
27
vasculature
26
blood vessel
20
heart
18
limb
13
kidney
12
musculature of body
11
nerve
9
artery
8
embryo
8
spleen
7
vein
6
blood
6
bodily fluid
4
gonad
4
ovary
3
eye
1
lymph node
Project
78
AMP
Genome assembly (visualization)
23
GRCh38
23
hg19
Lab
78
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
21
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
78 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
30
body of pancreas
9
pancreas
3
endocrine pancreas
2
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
6
pancreatic beta cell
6
cell line
Panc1
7
EndoC_BH1
2
in vitro differentiated cells
pancreatic PP cell
1
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