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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
total RNA-seq
ChIP-seq
17
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
116
Transcription
17
DNA accessibility
4
3D chromatin structure
Date released
89
May, 2021
February, 2021
15
February, 2018
14
February, 2023
9
August, 2021
8
March, 2020
6
October, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
123
bam
122
bigWig
109
tsv
bed narrowPeak
21
fastq
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
148
Homo sapiens
Biosample type
944
tissue
693
primary cell
148
in vitro differentiated cells
87
cell line
7
stem cell
Organ
19
connective tissue
7
embryo
2
epithelium
1
adipose tissue
1
heart
Project
148
AMP
Genome assembly (visualization)
130
hg19
105
GRCh38
4
hg18
Lab
135
AMP-T2D consortium
10
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
82
inconsistent ontology term
2
audit script error
files.file_type!
bed narrowPeak
assay_title!
ChIP-seq
month_released!
February, 2021
BIOSAMPLE
ASSAY
148 results
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total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
5
1
cardiomyocytes (cardiac muscle cell)
3
2
2
2
induced pluripotent stem cell
9
neural progenitor cell
7
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