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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
53
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
249
Transcription
219
DNA accessibility
58
DNA methylation
53
DNA binding
10
3D chromatin structure
Target of assay
32
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
101
May, 2022
88
February, 2023
79
May, 2021
35
February, 2021
28
July, 2019
26
August, 2017
26
September, 2018
19
September, 2020
13
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
Available data
513
bigWig
509
bam
bed narrowPeak
281
fastq
170
tsv
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
606
Homo sapiens
Biosample type
1619
tissue
606
primary cell
260
in vitro differentiated cells
258
cell line
8
stem cell
Organ
230
epithelium
204
pancreas
18
connective tissue
16
vasculature
14
blood vessel
14
kidney
9
vein
8
blood
8
bodily fluid
8
liver
7
brain
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
246
AMP
239
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
240
hg19
175
GRCh38
Lab
241
AMP-T2D consortium
239
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
22
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
606 results
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total RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
29
6
31
1
pancreatic beta cell
21
16
6
16
1
monocyte
54
2
1
1
1
Langerhans cell
48
exocrine cell
39
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