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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
53
ChIP-seq
47
WGBS
17
pCHi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
249
Transcription
219
DNA accessibility
58
DNA methylation
53
DNA binding
3D chromatin structure
Target of assay
32
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
101
May, 2022
88
February, 2023
79
May, 2021
35
February, 2021
26
August, 2017
26
September, 2018
24
July, 2019
19
September, 2020
12
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
November, 2017
2
October, 2018
1
August, 2021
1
May, 2019
Available data
509
bam
509
bigWig
bed narrowPeak
281
fastq
170
tsv
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
1
bed bed3
1
tar
Organism
596
Homo sapiens
Biosample type
1597
tissue
596
primary cell
256
in vitro differentiated cells
254
cell line
8
stem cell
Organ
223
epithelium
201
pancreas
17
connective tissue
14
kidney
12
vasculature
10
blood vessel
8
blood
8
bodily fluid
7
heart
7
liver
7
vein
5
musculature of body
4
brain
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
240
AMP
236
HPAP
120
T1D
Genome assembly (visualization)
231
hg19
174
GRCh38
Lab
236
Klaus Kaestner, Upenn
235
AMP-T2D consortium
125
Kyle Gaulton, UCSD
Audit category:
27
audit script error
22
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
assay_title!
single cell RNA-seq
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
596 results
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total RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
29
6
31
monocyte
54
2
1
1
1
pancreatic beta cell
21
16
6
16
Langerhans cell
48
exocrine cell
39
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