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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
total RNA-seq
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
52
ChIP-seq
47
WGBS
17
pCHi-C
9
Hi-C
9
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
244
Transcription
219
DNA accessibility
57
DNA methylation
52
DNA binding
9
3D chromatin structure
Target of assay
31
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
101
May, 2022
88
February, 2023
79
May, 2021
35
February, 2021
26
August, 2017
26
July, 2019
26
September, 2018
19
September, 2020
13
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
4
November, 2020
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
Available data
502
bigWig
497
bam
bed narrowPeak
281
fastq
165
tsv
107
bigBed narrowPeak
101
zippedFastqFolder
96
tagAlign
47
bed broadPeak
47
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
1
bed bed3
1
tar
Organism
598
Homo sapiens
Biosample type
1366
tissue
598
primary cell
259
in vitro differentiated cells
165
cell line
8
stem cell
Organ
230
epithelium
204
pancreas
18
connective tissue
16
vasculature
14
blood vessel
14
kidney
9
vein
8
blood
8
bodily fluid
liver
7
brain
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
239
HPAP
238
AMP
120
T1D
1
ITG
Genome assembly (visualization)
233
hg19
170
GRCh38
Lab
239
Klaus Kaestner, Upenn
233
AMP-T2D consortium
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
22
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
assay_title!
single cell RNA-seq
organ_slims!
liver
BIOSAMPLE
ASSAY
598 results
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total RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
29
6
31
1
pancreatic beta cell
21
16
6
16
1
monocyte
54
2
1
1
1
Langerhans cell
48
exocrine cell
39
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