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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
36
ChIP-seq
Assay category
127
Transcription
36
DNA binding
Target of assay
30
control
5
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
80
May, 2021
23
February, 2018
22
February, 2021
14
August, 2021
11
August, 2017
9
December, 2017
2
March, 2020
2
October, 2019
Available data
291
bam
259
bigWig
141
fastq
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
163
Homo sapiens
Biosample type
1126
tissue
244
primary cell
192
cell line
163
in vitro differentiated cells
1
stem cell
Organ
16
connective tissue
14
embryo
6
epithelium
1
heart
1
liver
1
pancreas
Project
163
AMP
Genome assembly (visualization)
137
GRCh38
137
hg19
Lab
163
AMP-T2D consortium
Audit category:
89
inconsistent ontology term
Audit category:
6
missing controlled_by
files.file_type!
bed narrowPeak
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
163 results
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total RNA-seq
ChIP-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
adipocyte
4
11
neural progenitor cell
7
7
pancreatic endoderm
4
6
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