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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
74
total RNA-seq
13
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
74
Transcription
13
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
674
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
139
February, 2023
128
May, 2022
125
October, 2019
120
July, 2018
107
August, 2021
98
July, 2019
93
November, 2017
61
March, 2020
31
October, 2018
26
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
September, 2020
16
January, 2021
15
April, 2019
14
November, 2018
14
November, 2020
12
May, 2023
11
October, 2017
10
April, 2020
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
7
December, 2019
6
April, 2018
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
bed narrowPeak
64
xls
49
bam
49
txt
47
bigWig
25
tsv
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
106
Homo sapiens
Biosample type
59
tissue
30
cell line
17
in vitro differentiated cells
1
primary cell
Organ
58
kidney
18
liver
8
embryo
4
pancreas
3
connective tissue
3
epithelium
1
adipose tissue
Project
107
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
56
Katalin Susztak, Upenn
27
AMP-T2D consortium
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bed narrowPeak
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
107 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
49
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
cell line
HepG2
9
4
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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