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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
152
single cell RNA-seq
82
ATAC-seq
82
snATAC-seq
47
WGBS
44
ChIP-seq
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
82
DNA accessibility
Date released
39
May, 2022
12
February, 2023
11
May, 2023
7
August, 2020
5
May, 2021
4
March, 2019
3
September, 2020
1
October, 2017
Available data
bed narrowPeak
64
xls
41
bigWig
39
zippedFastqFolder
30
fastq
19
bam
3
bed bedgraph
3
txt
2
bed broadPeak
Organism
82
Homo sapiens
Biosample type
49
primary cell
27
tissue
6
in vitro differentiated cells
Organ
65
pancreas
49
epithelium
11
kidney
Project
49
HPAP
22
AMP
11
T1D
Genome assembly (visualization)
24
GRCh38
9
hg19
Lab
AMP-T2D consortium
49
Klaus Kaestner, Upenn
16
Kyle Gaulton, UCSD
11
Katalin Susztak, Upenn
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
1
Struan F.A. Grant, CHOP
files.file_type!
bed narrowPeak
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell
29
pancreatic beta cell
16
pancreatic acinar cell
4
tissue
islet of Langerhans
16
kidney
11
in vitro differentiated cells
embryonic stem cell
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
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