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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
312
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
52
ATAC-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
312
DNA binding
Target of assay
185
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
Date released
114
August, 2017
50
October, 2019
29
October, 2018
24
November, 2017
23
May, 2020
22
May, 2019
15
April, 2019
12
December, 2017
9
October, 2017
6
September, 2017
4
December, 2018
3
November, 2018
1
January, 2019
Available data
722
bam
575
bigWig
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
311
Homo sapiens
Biosample type
312
tissue
92
cell line
88
in vitro differentiated cells
53
primary cell
1
stem cell
Organ
67
connective tissue
66
adipose tissue
66
liver
45
brain
44
pancreas
18
limb
16
blood vessel
16
heart
16
vasculature
11
nerve
10
musculature of body
8
spleen
7
artery
7
kidney
4
gonad
4
ovary
2
eye
1
lymph node
Project
312
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
312
AMP-T2D consortium
Audit category:
22
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
312 results
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Clear Filters
ChIP-seq
tissue
liver
63
islet of Langerhans
51
subcutaneous abdominal adipose tissue
35
white adipose tissue
12
tibial nerve
11
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