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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1533
total RNA-seq
546
ChIP-seq
363
single cell RNA-seq
253
ATAC-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
3
DNA accessibility
Date released
18
July, 2019
2
October, 2019
1
August, 2017
Available data
227
bam
227
bigWig
bed narrowPeak
209
bigBed narrowPeak
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
18
tsv
12
fastq
Organism
21
Homo sapiens
Biosample type
17
tissue
4
primary cell
Organ
4
brain
4
liver
3
adipose tissue
3
connective tissue
3
kidney
2
epithelium
2
musculature of body
2
pancreas
1
heart
Project
21
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
21
AMP-T2D consortium
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
21 results
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small RNA-seq
DNase-seq
tissue
right lobe of liver
2
1
body of pancreas
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
+ See 9 more…
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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