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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
17
WGBS
1
Hi-C
Assay category
23
DNA accessibility
17
DNA methylation
1
3D chromatin structure
Date released
11
May, 2023
9
July, 2019
7
August, 2020
7
November, 2018
3
September, 2020
2
August, 2017
1
March, 2023
1
October, 2017
Available data
bed narrowPeak
108
bigWig
99
bam
79
bigBed narrowPeak
64
xls
41
tagAlign
24
fastq
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
1
hic
Organism
41
Homo sapiens
Biosample type
29
tissue
11
primary cell
1
cell line
Organ
14
pancreas
11
kidney
10
epithelium
6
heart
2
adipose tissue
2
brain
2
connective tissue
2
spleen
1
blood vessel
1
limb
1
liver
1
musculature of body
1
vasculature
Project
30
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
hg19
1495
GRCh38
5
hg18
Lab
19
AMP-T2D consortium
11
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
ITG
files.file_type!
bed narrowPeak
assembly!
hg19
BIOSAMPLE
ASSAY
41 results
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Clear Filters
ATAC-seq
WGBS
Hi-C
tissue
kidney
11
adipose tissue
2
body of pancreas
2
heart left ventricle
2
heart right ventricle
2
+ See 8 more…
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
chondrocytes
1
cell line
HepG2
1
See all biosamples
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