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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ATAC-seq
2
ChIP-seq
2
Hi-C
1
total RNA-seq
Assay category
24
DNA accessibility
2
3D chromatin structure
2
DNA binding
1
Transcription
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
12
May, 2023
7
August, 2020
3
October, 2019
3
September, 2020
2
March, 2019
1
March, 2023
1
October, 2017
Available data
bam
2890
bigWig
bed narrowPeak
1400
tsv
998
bigBed narrowPeak
951
fastq
282
bed broadPeak
267
bigBed broadPeak
258
bed bed3+
246
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
29
Homo sapiens
Biosample type
17
tissue
11
primary cell
1
cell line
Organ
14
pancreas
11
kidney
10
epithelium
2
brain
1
adipose tissue
1
connective tissue
Project
18
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
97
hg19
29
GRCh38
5
hg18
Lab
11
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
4
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
files.file_type!
bed narrowPeak
bam
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
tissue
kidney
11
islet of Langerhans
3
adipose tissue
1
dorsal plus ventral thalamus
1
planum polare
1
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
chondrocytes
1
cell line
Panc1
1
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