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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
Assay category
12
Transcription
5
DNA binding
3
3D chromatin structure
2
DNA methylation
1
DNA accessibility
Target of assay
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
16
July, 2019
3
November, 2017
3
October, 2019
1
February, 2023
Available data
159
bigWig
155
bam
bed narrowPeak
65
bigBed narrowPeak
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
17
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
23
Homo sapiens
Biosample type
13
tissue
10
primary cell
Organ
515
connective tissue
446
pancreas
413
adipose tissue
188
liver
166
epithelium
75
heart
68
vasculature
66
blood vessel
62
bone element
54
artery
23
brain
17
kidney
15
embryo
13
musculature of body
4
limb
4
nerve
4
skeleton
4
vein
2
pericardium
1
blood
1
bodily fluid
1
eye
Project
23
AMP
Genome assembly (visualization)
23
hg19
16
GRCh38
Lab
23
AMP-T2D consortium
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
tissue
brain
1
1
1
diencephalon
1
1
frontal cortex
1
1
temporal lobe
1
1
cerebellum
1
+ See 3 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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