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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
18
snATAC-seq
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
105
Transcription
29
DNA accessibility
Date released
51
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
4
March, 2020
Available data
186
bam
186
bigWig
98
tsv
bed narrowPeak
84
tagAlign
Organism
139
Homo sapiens
Biosample type
104
primary cell
28
tissue
7
cell line
Organ
30
pancreas
8
blood
8
bodily fluid
2
epithelium
Project
2521
AMP
324
HPAP
139
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
135
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
files.file_type!
bed narrowPeak
audit.WARNING.category!
inconsistent control read length
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
139 results
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total RNA-seq
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 21 more…
tissue
islet of Langerhans
7
6
11
pancreas
4
cell line
EndoC_BH1
2
3
2
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