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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ATAC-seq
102
single cell RNA-seq
59
total RNA-seq
53
ChIP-seq
10
RRBS
6
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
163
Transcription
114
DNA accessibility
53
DNA binding
11
DNA methylation
6
3D chromatin structure
Target of assay
35
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
102
May, 2020
48
July, 2018
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
13
October, 2019
12
February, 2023
12
May, 2021
8
June, 2019
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
2
February, 2021
2
October, 2018
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
Available data
429
bam
423
bigWig
240
fastq
bed narrowPeak
168
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
348
Homo sapiens
Biosample type
1698
tissue
348
primary cell
262
in vitro differentiated cells
249
cell line
6
stem cell
Organ
148
epithelium
126
pancreas
21
connective tissue
16
vasculature
14
blood vessel
14
kidney
10
brain
9
vein
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
348
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
241
hg19
168
GRCh38
Lab
343
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
24
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
348 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
12
10
6
pancreatic beta cell
12
10
6
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
CD4-positive, alpha-beta memory T cell
22
pancreatic acinar cell
12
4
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