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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
Hi-C
Assay category
1803
Transcription
454
DNA binding
321
DNA accessibility
96
DNA methylation
30
3D chromatin structure
Date released
10
March, 2020
8
July, 2019
4
October, 2019
3
October, 2022
2
August, 2021
1
March, 2019
1
March, 2023
1
November, 2019
Available data
21
hic
18
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
Organism
30
Homo sapiens
Biosample type
16
tissue
10
primary cell
cell line
4
in vitro differentiated cells
Organ
7
epithelium
7
pancreas
6
musculature of body
5
blood vessel
5
vasculature
4
limb
3
brain
3
heart
2
liver
2
vein
1
connective tissue
1
kidney
Project
26
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
24
hg19
1
GRCh38
Lab
23
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
4
inconsistent ontology term
files.file_type!
bed narrowPeak
biosample_type!
cell line
BIOSAMPLE
ASSAY
30 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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