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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
57
total RNA-seq
9
ChIP-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
163
Transcription
9
DNA binding
6
DNA accessibility
2
3D chromatin structure
Target of assay
8
control
1
broad histone mark
1
histone
1
histone modification
Date released
610
February, 2021
313
May, 2020
269
August, 2017
246
May, 2021
183
August, 2021
168
July, 2018
162
May, 2022
134
February, 2023
110
October, 2019
101
July, 2019
59
September, 2020
51
March, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
November, 2017
27
September, 2018
25
February, 2020
23
February, 2018
23
May, 2019
22
December, 2017
20
November, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
October, 2017
10
December, 2019
10
November, 2018
8
June, 2019
8
November, 2020
7
August, 2020
7
January, 2018
September, 2017
5
March, 2019
4
August, 2018
4
December, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
1
January, 2019
Available data
106
tsv
bed narrowPeak
64
xls
57
txt
41
bam
25
bigWig
24
tagAlign
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
182
Homo sapiens
Biosample type
165
tissue
cell line
17
in vitro differentiated cells
1
primary cell
Organ
92
heart
64
kidney
6
blood vessel
6
vasculature
3
connective tissue
2
artery
2
pancreas
1
adipose tissue
1
epithelium
1
liver
Project
183
AMP
Genome assembly (visualization)
10
hg19
7
GRCh38
Lab
115
AMP-T2D consortium
64
Katalin Susztak, Upenn
2
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
files.file_type!
bed narrowPeak
biosample_type!
cell line
month_released!
September, 2017
BIOSAMPLE
ASSAY
183 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
7
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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