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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
Assay category
31
DNA binding
Target of assay
156
control
58
histone
58
histone modification
31
broad histone mark
27
narrow histone mark
26
transcription factor
7
RNA binding protein
3
nucleotide modification
1
recombinant protein
Date released
12
August, 2017
12
May, 2021
5
October, 2019
1
August, 2021
1
November, 2017
Available data
174
bigWig
bed narrowPeak
156
bam
73
fastq
71
tagAlign
38
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
6
bed bed3+
Organism
31
Homo sapiens
Biosample type
tissue
19
in vitro differentiated cells
10
primary cell
2
cell line
Organ
8
connective tissue
5
pancreas
4
blood vessel
4
epithelium
4
vasculature
4
vein
1
liver
Project
31
AMP
Genome assembly (visualization)
7
hg19
4
GRCh38
Lab
21
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
bed narrowPeak
biosample_type!
tissue
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
in vitro differentiated cells
embryonic stem cell
10
adipocyte
8
neural progenitor cell
1
primary cell
endothelial cell of umbilical vein
4
pancreatic endocrine cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
1
cell line
HepG2
1
Panc1
1
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