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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
5
STARR-seq
4
ChIP-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
17
Transcription
4
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
4
control
Date released
82
February, 2021
66
November, 2017
30
August, 2021
20
May, 2021
15
October, 2019
10
March, 2020
8
January, 2019
6
February, 2023
6
November, 2020
4
November, 2018
4
November, 2019
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
October, 2022
Available data
22
bigWig
17
tsv
bed narrowPeak
8
bam
1
bedpe bed3+
1
hic
1
vcf
Organism
30
Homo sapiens
Biosample type
165
tissue
30
cell line
17
in vitro differentiated cells
1
primary cell
Organ
17
liver
8
embryo
2
epithelium
2
kidney
2
pancreas
Project
30
AMP
Genome assembly (visualization)
9
hg19
8
GRCh38
Lab
20
Bing Ren, UCSD
10
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
bed narrowPeak
assay_title!
WGBS
BIOSAMPLE
ASSAY
30 results
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total RNA-seq
STARR-seq
ChIP-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
9
2
4
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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