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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
ChIP-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
whole genome sequencing assay
Assay category
19
DNA accessibility
9
Transcription
5
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
7
control
3
nucleotide modification
1
transcription factor
Date released
22
August, 2021
16
May, 2021
6
February, 2023
6
March, 2020
6
November, 2020
1
December, 2018
1
February, 2021
1
January, 2018
1
May, 2020
1
November, 2017
1
November, 2019
1
October, 2019
1
October, 2022
Available data
bam
522
bigWig
427
fastq
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
62
Homo sapiens
Biosample type
661
tissue
449
primary cell
99
in vitro differentiated cells
64
cell line
5
stem cell
Organ
29
pancreas
28
epithelium
21
liver
4
kidney
1
blood
1
bodily fluid
1
mammary gland
Project
59
AMP
5
T1D
community
Genome assembly (visualization)
7
hg19
1
GRCh38
Lab
33
AMP-T2D consortium
20
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
30
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bed narrowPeak
bam
award.project!
community
BIOSAMPLE
ASSAY
64 results
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Clear Filters
ATAC-seq
total RNA-seq
MeRIP-seq
pCHi-C
ChIP-seq
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
whole genome sequencing assay
cell line
EndoC_BH1
18
6
1
3
2
2
1
HepG2
9
2
5
2
2
1
HEK293T
2
GM12878
1
MCF-7
1
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