Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
total RNA-seq
18
ATAC-seq
9
ChIP-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
41
Transcription
18
DNA accessibility
9
DNA binding
2
3D chromatin structure
Target of assay
11
control
3
nucleotide modification
1
broad histone mark
1
histone
1
histone modification
Date released
26
February, 2021
20
May, 2021
10
August, 2021
8
October, 2019
6
November, 2020
4
March, 2020
4
November, 2019
1
February, 2023
Available data
71
bam
64
bigWig
42
tsv
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
78
Homo sapiens
Biosample type
382
tissue
278
primary cell
79
cell line
16
in vitro differentiated cells
Organ
93
liver
71
pancreas
64
epithelium
54
artery
54
blood vessel
54
heart
54
vasculature
11
kidney
8
embryo
7
blood
7
bodily fluid
1
mammary gland
Project
77
AMP
2
T1D
Genome assembly (visualization)
45
hg19
42
GRCh38
Lab
73
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
62
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
79 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
cell line
EndoC_BH1
33
18
2
6
2
1
1
H1-hESC
8
Panc1
7
1
Download