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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
18
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
ChIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
34
Transcription
18
DNA accessibility
2
DNA binding
1
3D chromatin structure
Target of assay
5
control
3
nucleotide modification
Date released
26
February, 2021
20
May, 2021
6
November, 2020
4
March, 2020
4
November, 2019
2
August, 2021
1
February, 2023
1
October, 2019
Available data
51
bam
50
bigWig
35
tsv
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
63
Homo sapiens
Biosample type
300
primary cell
64
cell line
6
in vitro differentiated cells
3
tissue
Organ
93
liver
71
pancreas
64
epithelium
54
artery
54
blood vessel
54
heart
54
vasculature
11
kidney
8
embryo
7
blood
7
bodily fluid
1
mammary gland
Project
62
AMP
2
T1D
Genome assembly (visualization)
37
hg19
34
GRCh38
Lab
58
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
62
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
64 results
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total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
33
18
6
2
2
1
1
glomerular visceral epithelial cell
1
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