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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
47
total RNA-seq
19
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
Assay category
86
DNA binding
47
Transcription
19
DNA accessibility
Target of assay
35
control
34
histone
34
histone modification
19
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
62
May, 2021
25
August, 2017
23
February, 2018
17
August, 2021
10
February, 2023
8
February, 2021
7
December, 2017
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
190
bam
166
bigWig
137
fastq
bed narrowPeak
41
tsv
37
tagAlign
23
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
160
Homo sapiens
Biosample type
1706
tissue
764
primary cell
187
cell line
160
in vitro differentiated cells
7
stem cell
Organ
48
connective tissue
11
embryo
3
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
160
AMP
Genome assembly (visualization)
71
hg19
50
GRCh38
4
hg18
Lab
110
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
files.file_type!
bed narrowPeak
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
160 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
in vitro differentiated cells
embryonic stem cell
38
7
5
1
adipocyte
25
5
7
1
neural progenitor cell
8
7
pancreatic endoderm
6
4
1
induced pluripotent stem cell
9
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