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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
4
Hi-C
3
pCHi-C
2
ATAC-seq
2
ChIP-seq
2
single cell RNA-seq
Assay category
91
Transcription
4
3D chromatin structure
2
DNA accessibility
2
DNA binding
Target of assay
2
control
Date released
65
May, 2021
18
February, 2021
7
March, 2020
4
February, 2023
4
October, 2019
2
December, 2017
2
December, 2019
Available data
101
bam
93
bigWig
90
tsv
bed narrowPeak
6
bedpe bed3+
4
fastq
4
hic
3
tagAlign
2
bed bed3+
2
ibed
1
bed bedgraph
1
txt
Organism
102
Homo sapiens
Biosample type
102
in vitro differentiated cells
87
tissue
71
cell line
29
primary cell
1
stem cell
Organ
4
connective tissue
4
embryo
3
epithelium
Project
102
AMP
Genome assembly (visualization)
95
hg19
87
GRCh38
Lab
102
AMP-T2D consortium
Audit category:
102
inconsistent ontology term
2
audit script error
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
102 results
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total RNA-seq
Hi-C
pCHi-C
ATAC-seq
ChIP-seq
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
cardiomyocytes (cardiac muscle cell)
3
2
2
2
immature adipocyte
2
2
lymphocyte of B lineage (iPSC)
1
1
1
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