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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
82
ChIP-seq
21
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
82
DNA binding
21
DNA accessibility
4
3D chromatin structure
Target of assay
37
control
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
127
May, 2021
26
February, 2021
23
February, 2018
20
August, 2017
17
August, 2021
14
February, 2023
8
December, 2017
8
March, 2020
6
October, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
285
bam
254
bigWig
135
fastq
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
256
Homo sapiens
Biosample type
1771
tissue
781
primary cell
257
cell line
256
in vitro differentiated cells
8
stem cell
Organ
47
connective tissue
14
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
256
AMP
Genome assembly (visualization)
161
hg19
132
GRCh38
4
hg18
Lab
206
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
files.file_type!
bed narrowPeak
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
256 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
38
5
1
adipocyte
5
20
7
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
8
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