Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
8
ATAC-seq
5
ChIP-seq
4
GRO-seq
Assay category
127
Transcription
8
DNA accessibility
5
DNA binding
Target of assay
5
transcription factor
Date released
84
May, 2021
22
February, 2021
15
February, 2018
7
August, 2021
5
August, 2017
4
January, 2018
4
October, 2019
2
March, 2020
1
February, 2023
Available data
291
bam
259
bigWig
141
fastq
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
144
Homo sapiens
Biosample type
962
tissue
334
primary cell
144
in vitro differentiated cells
128
cell line
1
stem cell
Organ
12
connective tissue
7
embryo
2
epithelium
1
heart
Project
144
AMP
Genome assembly (visualization)
140
hg19
132
GRCh38
4
hg18
Lab
138
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
87
inconsistent ontology term
Audit category:
5
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
144 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
adipocyte
4
2
5
induced pluripotent stem cell
9
embryonic stem cell
2
5
+ See 21 more…
See all biosamples
Download