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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
pCHi-C
Assay category
28
DNA binding
15
Transcription
Target of assay
22
control
5
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
23
February, 2018
11
August, 2017
9
December, 2017
4
January, 2018
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
48
Homo sapiens
Biosample type
320
primary cell
208
tissue
80
cell line
48
in vitro differentiated cells
2
stem cell
Organ
13
embryo
12
connective tissue
3
epithelium
1
adipose tissue
1
liver
Project
48
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
4
hg18
Lab
48
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
6
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
in vitro differentiated cells
adipocyte
11
pancreatic endoderm
6
4
1
definitive endodermal cell
2
2
1
primitive gut cell
2
2
1
embryonic stem cell
1
2
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