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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
184
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
47
WGBS
21
ChIP-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
433
Transcription
219
DNA accessibility
58
DNA methylation
21
DNA binding
10
3D chromatin structure
Target of assay
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
76
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
28
July, 2019
27
September, 2018
13
August, 2017
10
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
603
bigWig
577
bam
393
fastq
bed narrowPeak
267
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
98
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
758
Homo sapiens
Biosample type
1606
tissue
758
primary cell
225
in vitro differentiated cells
cell line
7
stem cell
Organ
279
epithelium
266
pancreas
19
connective tissue
12
vasculature
11
blood vessel
11
kidney
8
blood
8
bodily fluid
7
liver
7
vein
5
heart
4
brain
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
324
HPAP
313
AMP
120
T1D
1
ITG
Genome assembly (visualization)
330
hg19
272
GRCh38
Lab
324
Klaus Kaestner, Upenn
311
AMP-T2D consortium
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
24
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
biosample_type!
cell line
target.investigated_as!
control
BIOSAMPLE
ASSAY
758 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
31
1
pancreatic beta cell
21
12
16
16
1
monocyte
54
2
1
1
1
exocrine cell
39
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