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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
53
ChIP-seq
41
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
207
DNA accessibility
184
Transcription
53
DNA binding
52
DNA methylation
10
3D chromatin structure
Target of assay
32
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
134
May, 2022
102
May, 2020
76
February, 2023
59
September, 2020
40
February, 2021
27
May, 2021
26
August, 2017
13
July, 2019
11
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
613
bigWig
609
bam
409
fastq
bed narrowPeak
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
523
Homo sapiens
Biosample type
717
tissue
523
primary cell
139
cell line
131
in vitro differentiated cells
4
stem cell
Organ
184
epithelium
170
pancreas
14
vasculature
12
blood vessel
9
vein
8
blood
8
bodily fluid
8
kidney
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
318
HPAP
180
AMP
24
T1D
1
ITG
Genome assembly (visualization)
88
hg19
23
GRCh38
Lab
318
Klaus Kaestner, Upenn
175
AMP-T2D consortium
29
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
12
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
tsv
BIOSAMPLE
ASSAY
523 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
6
25
1
pancreatic beta cell
16
11
6
16
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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