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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
total RNA-seq
112
ATAC-seq
102
single cell RNA-seq
53
ChIP-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
7
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
53
DNA binding
Target of assay
32
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
25
August, 2017
8
June, 2019
8
October, 2019
7
May, 2021
3
November, 2017
1
August, 2021
1
May, 2019
Available data
247
bigWig
242
bam
bed narrowPeak
100
tagAlign
94
fastq
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
53
Homo sapiens
Biosample type
312
tissue
92
cell line
88
in vitro differentiated cells
53
primary cell
1
stem cell
Organ
26
epithelium
24
pancreas
9
vasculature
8
blood vessel
7
vein
3
brain
3
connective tissue
3
kidney
2
heart
2
musculature of body
1
eye
1
liver
Project
53
AMP
Genome assembly (visualization)
21
hg19
12
GRCh38
Lab
50
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
primary cell
pancreatic endocrine cell
12
endothelial cell of umbilical vein
7
pancreatic alpha cell
6
pancreatic beta cell
6
CD8-positive, alpha-beta T cell
3
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