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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
total RNA-seq
175
single cell RNA-seq
161
ATAC-seq
53
ChIP-seq
41
WGBS
29
snATAC-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
423
Transcription
192
DNA accessibility
53
DNA binding
52
DNA methylation
10
3D chromatin structure
Target of assay
35
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
February, 2021
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
13
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
611
bigWig
606
bam
364
fastq
bed narrowPeak
263
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
746
Homo sapiens
Biosample type
1256
tissue
746
primary cell
236
in vitro differentiated cells
176
cell line
8
stem cell
Organ
294
epithelium
272
pancreas
20
connective tissue
16
vasculature
14
blood vessel
14
kidney
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
346
AMP
279
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
338
hg19
274
GRCh38
Lab
341
AMP-T2D consortium
279
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
29
inconsistent ontology term
4
audit script error
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
February, 2021
BIOSAMPLE
ASSAY
746 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
29
6
25
1
Langerhans cell
73
21
pancreatic beta cell
21
12
16
6
16
1
monocyte
54
2
1
1
1
exocrine cell
39
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