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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
117
single cell RNA-seq
112
ATAC-seq
56
snATAC-seq
27
ChIP-seq
17
pCHi-C
4
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
273
Transcription
168
DNA accessibility
27
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
16
histone
16
histone modification
14
control
10
narrow histone mark
6
broad histone mark
Date released
147
May, 2020
79
May, 2021
54
May, 2022
51
February, 2023
41
February, 2021
40
September, 2020
18
July, 2019
15
July, 2018
14
August, 2017
10
April, 2018
8
January, 2021
6
June, 2019
4
November, 2020
2
June, 2018
1
March, 2023
1
November, 2017
1
November, 2018
1
September, 2018
Available data
382
bigWig
367
bam
bed narrowPeak
171
fastq
154
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
493
Homo sapiens
Biosample type
1790
tissue
493
primary cell
256
in vitro differentiated cells
194
cell line
8
stem cell
Organ
epithelium
278
pancreas
22
connective tissue
16
vasculature
14
blood vessel
14
kidney
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
200
AMP
172
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
213
hg19
155
GRCh38
Lab
195
AMP-T2D consortium
172
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
25
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
493 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
monocyte
54
2
1
1
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
2
1
CD4-positive, alpha-beta memory T cell
22
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