Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
66
ChIP-seq
6
WGBS
2
ATAC-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
399
Transcription
66
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
12
transcription factor
10
narrow histone mark
Date released
386
February, 2021
54
August, 2017
18
October, 2018
10
July, 2019
2
February, 2020
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
440
bam
423
bigWig
399
tsv
43
fastq
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
474
Homo sapiens
Biosample type
475
tissue
2
primary cell
1
in vitro differentiated cells
Organ
534
connective tissue
475
adipose tissue
382
pancreas
248
liver
150
bone element
146
kidney
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
475
AMP
Genome assembly (visualization)
411
GRCh38
411
hg19
Lab
475
AMP-T2D consortium
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
475 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
white adipose tissue
12
visceral abdominal adipose tissue
3
See all biosamples
Download