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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
416
total RNA-seq
68
ChIP-seq
6
WGBS
5
pCHi-C
3
ATAC-seq
2
small RNA-seq
1
RNA microarray
Assay category
418
Transcription
68
DNA binding
6
DNA methylation
3
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
12
narrow histone mark
12
transcription factor
Date released
386
February, 2021
54
August, 2017
22
October, 2019
18
October, 2018
10
July, 2019
4
February, 2023
3
February, 2020
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
Available data
443
bam
426
bigWig
404
tsv
bed narrowPeak
43
fastq
13
bigBed narrowPeak
9
bed bed3+
8
tagAlign
6
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
500
Homo sapiens
Biosample type
501
tissue
4
primary cell
1
in vitro differentiated cells
Organ
534
connective tissue
475
adipose tissue
382
pancreas
248
liver
150
bone element
146
kidney
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
501
AMP
Genome assembly (visualization)
411
GRCh38
411
hg19
Lab
501
AMP-T2D consortium
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
501 results
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total RNA-seq
ChIP-seq
WGBS
pCHi-C
ATAC-seq
small RNA-seq
RNA microarray
tissue
adipose tissue
382
1
3
1
2
subcutaneous abdominal adipose tissue
35
3
islet of Langerhans
14
2
4
1
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
white adipose tissue
12
retina
3
visceral abdominal adipose tissue
3
pigmented layer of retina
2
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