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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
44
ChIP-seq
21
ATAC-seq
11
snATAC-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
44
DNA binding
32
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
29
control
11
histone
11
histone modification
6
narrow histone mark
6
transcription factor
5
broad histone mark
2
nucleotide modification
1
RNA binding protein
Date released
120
July, 2018
115
August, 2017
37
May, 2021
20
November, 2019
18
February, 2023
11
October, 2018
8
January, 2021
7
March, 2020
6
April, 2018
6
July, 2019
6
May, 2022
6
September, 2017
5
March, 2019
4
November, 2018
4
November, 2020
3
October, 2019
2
August, 2021
1
August, 2022
1
February, 2020
1
May, 2019
1
October, 2017
Available data
429
bam
373
bigWig
275
tsv
213
fastq
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
381
Homo sapiens
Biosample type
382
tissue
278
primary cell
71
cell line
1
in vitro differentiated cells
Organ
534
connective tissue
475
adipose tissue
382
pancreas
248
liver
150
bone element
146
kidney
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
354
AMP
28
T1D
Genome assembly (visualization)
292
hg19
289
GRCh38
Lab
337
AMP-T2D consortium
33
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
9
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
382 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
Hi-C
MeRIP-seq
WGBS
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
30
21
7
3
4
1
body of pancreas
3
9
2
2
pancreas
2
3
4
1
2
1
1
endocrine pancreas
2
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