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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
total RNA-seq
44
ChIP-seq
21
ATAC-seq
11
snATAC-seq
6
single cell RNA-seq
4
MeRIP-seq
4
WGBS
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
44
DNA binding
32
DNA accessibility
6
DNA methylation
3D chromatin structure
Target of assay
29
control
11
histone
11
histone modification
6
narrow histone mark
6
transcription factor
5
broad histone mark
2
nucleotide modification
1
RNA binding protein
Date released
120
July, 2018
115
August, 2017
37
May, 2021
19
November, 2019
18
February, 2023
11
October, 2018
8
January, 2021
6
April, 2018
6
July, 2019
6
March, 2020
6
May, 2022
6
September, 2017
4
March, 2019
4
November, 2018
4
November, 2020
3
October, 2019
1
August, 2021
1
August, 2022
1
February, 2020
1
May, 2019
1
October, 2017
Available data
429
bam
373
bigWig
275
tsv
213
fastq
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
Organism
377
Homo sapiens
Biosample type
378
tissue
275
primary cell
69
cell line
1
in vitro differentiated cells
Organ
534
connective tissue
475
adipose tissue
378
pancreas
247
liver
150
bone element
145
kidney
137
heart
73
brain
32
blood vessel
32
vasculature
26
eye
26
limb
25
musculature of body
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
350
AMP
28
T1D
Genome assembly (visualization)
289
GRCh38
289
hg19
Lab
335
AMP-T2D consortium
33
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
9
missing controlled_by
files.file_type!
bed narrowPeak
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
378 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
MeRIP-seq
WGBS
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
278
30
21
7
6
4
1
body of pancreas
3
9
2
2
pancreas
2
3
4
2
1
1
endocrine pancreas
2
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