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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
total RNA-seq
184
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
53
ChIP-seq
47
WGBS
17
pCHi-C
6
Hi-C
2
DNase-seq
1
DNAme array
1
RRBS
Assay category
418
Transcription
219
DNA accessibility
53
DNA binding
49
DNA methylation
6
3D chromatin structure
Target of assay
32
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
July, 2019
27
September, 2018
26
August, 2017
13
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
591
bam
591
bigWig
409
fastq
bed narrowPeak
252
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
762
Homo sapiens
Biosample type
1723
tissue
762
primary cell
262
in vitro differentiated cells
258
cell line
8
stem cell
Organ
287
epithelium
278
pancreas
14
connective tissue
11
vasculature
10
blood vessel
9
vein
8
blood
8
bodily fluid
7
kidney
6
liver
3
brain
2
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
Project
324
HPAP
317
AMP
120
T1D
1
ITG
Genome assembly (visualization)
309
hg19
257
GRCh38
Lab
324
Klaus Kaestner, Upenn
312
AMP-T2D consortium
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
27
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
files.file_type!!
bed narrowPeak
month_released!
July, 2019
BIOSAMPLE
ASSAY
762 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
DNase-seq
DNAme array
RRBS
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
6
31
1
pancreatic beta cell
21
12
16
6
16
1
monocyte
54
2
1
1
1
exocrine cell
39
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