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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
53
ChIP-seq
47
WGBS
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
58
DNA methylation
53
DNA binding
6
3D chromatin structure
Target of assay
35
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
79
May, 2021
76
February, 2023
74
May, 2022
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
20
February, 2021
11
October, 2019
8
June, 2019
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
August, 2021
1
March, 2023
1
May, 2019
1
November, 2018
Available data
505
bigWig
495
bam
349
fastq
258
tsv
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
570
Homo sapiens
Biosample type
1702
tissue
570
primary cell
237
cell line
234
in vitro differentiated cells
8
stem cell
Organ
245
epithelium
226
pancreas
22
connective tissue
15
vasculature
13
blood vessel
12
kidney
10
brain
8
liver
8
vein
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
233
AMP
224
HPAP
112
T1D
1
ITG
Genome assembly (visualization)
291
hg19
265
GRCh38
Lab
228
AMP-T2D consortium
224
Klaus Kaestner, Upenn
117
Kyle Gaulton, UCSD
1
ITG
Audit category:
19
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
bedpe bed3+
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
570 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
6
31
Langerhans cell
85
monocyte
54
1
1
1
pancreatic beta cell
21
12
6
16
exocrine cell
39
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