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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
312
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
6
Hi-C
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
312
DNA binding
DNA accessibility
38
DNA methylation
6
3D chromatin structure
Target of assay
187
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
217
August, 2017
166
May, 2020
158
August, 2021
120
July, 2018
76
October, 2019
69
July, 2019
47
September, 2023
40
May, 2021
29
March, 2020
29
October, 2018
27
May, 2022
25
February, 2020
24
November, 2017
22
May, 2019
19
November, 2019
15
April, 2019
14
February, 2023
12
December, 2017
9
April, 2020
9
November, 2018
9
October, 2017
6
April, 2018
6
September, 2017
4
December, 2018
4
May, 2023
4
November, 2020
3
December, 2019
1
January, 2019
1
March, 2019
Available data
1662
bam
1548
bigWig
1075
tsv
bed narrowPeak
377
bigBed narrowPeak
336
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1700
Homo sapiens
Biosample type
1702
tissue
570
primary cell
237
cell line
234
in vitro differentiated cells
8
stem cell
Organ
532
connective tissue
473
adipose tissue
347
pancreas
246
liver
146
bone element
137
heart
129
kidney
69
brain
32
blood vessel
32
vasculature
30
limb
27
musculature of body
25
eye
16
nerve
11
artery
11
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1638
AMP
47
KPMP
9
LungMap
8
T1D
Genome assembly (visualization)
960
GRCh38
955
hg19
Lab
1546
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
7
audit script error
Audit category:
22
missing controlled_by
files.file_type!
bed narrowPeak
bedpe bed3+
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
1702 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
3
1
islet of Langerhans
298
51
4
1
1
4
liver
167
63
1
3
1
1
1
kidney
49
7
64
1
1
bone element
84
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