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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
469
ChIP-seq
263
single cell RNA-seq
248
total RNA-seq
171
ATAC-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
52
pCHi-C
10
MeRIP-seq
6
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
171
DNA accessibility
Date released
55
May, 2020
39
May, 2022
23
February, 2023
16
May, 2021
13
October, 2019
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
1
July, 2019
1
October, 2017
Available data
bed narrowPeak
64
xls
39
zippedFastqFolder
12
bigWig
12
fastq
12
tsv
3
bam
1
bed broadPeak
Organism
171
Homo sapiens
Biosample type
116
primary cell
39
tissue
16
cell line
Organ
81
pancreas
65
epithelium
11
kidney
3
brain
1
eye
1
pituitary gland
1
skin of body
Project
111
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
hg19
26
GRCh38
Lab
98
AMP-T2D consortium
49
Klaus Kaestner, Upenn
11
Katalin Susztak, Upenn
11
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
22
inconsistent ontology term
files.file_type!
bed narrowPeak
bedpe bed3+
assembly!
hg19
BIOSAMPLE
ASSAY
171 results
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ATAC-seq
primary cell
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
macrophage
11
+ See 5 more…
tissue
islet of Langerhans
26
kidney
11
cerebellum (Hemisphere)
1
posterior cingulate cortex
1
cell line
EndoC_BH1
16
See all biosamples
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