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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
12
DNA binding
9
Transcription
6
DNA methylation
4
3D chromatin structure
1
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
10
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
1
January, 2018
1
May, 2019
1
May, 2022
Available data
68
bigWig
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
Organism
33
Homo sapiens
Biosample type
28
tissue
5
primary cell
Organ
724
pancreas
608
connective tissue
477
adipose tissue
366
epithelium
348
liver
199
heart
164
kidney
151
bone element
100
vasculature
98
blood vessel
83
brain
67
artery
33
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
10
hg19
7
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
bedpe bed3+
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
33 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
1
4
1
1
1
gastrocnemius medialis
1
4
psoas muscle
2
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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