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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
total RNA-seq
13
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
13
DNA binding
6
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
692
February, 2021
269
August, 2017
269
May, 2020
211
August, 2021
198
May, 2021
168
July, 2018
162
May, 2022
122
October, 2019
117
February, 2023
101
July, 2019
93
November, 2017
59
September, 2020
49
April, 2018
47
September, 2023
45
March, 2020
31
October, 2018
27
September, 2018
25
February, 2020
23
February, 2018
23
May, 2019
22
December, 2017
22
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
123
tsv
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
24
tagAlign
5
bed bed3+
bedpe bed3+
2
hic
1
vcf
Organism
210
Homo sapiens
Biosample type
164
tissue
29
cell line
17
in vitro differentiated cells
1
primary cell
Organ
92
heart
66
kidney
17
liver
8
embryo
6
blood vessel
6
vasculature
3
connective tissue
3
epithelium
3
pancreas
2
artery
1
adipose tissue
Project
211
AMP
Genome assembly (visualization)
18
hg19
15
GRCh38
Lab
125
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bed narrowPeak
bedpe bed3+
award.project!
T1D
BIOSAMPLE
ASSAY
211 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
4
2
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
See all biosamples
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