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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
79
total RNA-seq
48
ChIP-seq
8
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
Assay category
86
Transcription
48
DNA binding
8
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
31
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
142
February, 2021
27
November, 2017
17
July, 2019
12
February, 2020
11
October, 2019
10
October, 2017
9
February, 2023
3
May, 2019
2
March, 2020
1
May, 2021
Available data
309
bam
280
bigWig
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
88
txt
84
tsv
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
234
Homo sapiens
Biosample type
223
tissue
11
primary cell
Organ
725
pancreas
608
connective tissue
477
adipose tissue
368
epithelium
348
liver
199
heart
171
kidney
151
bone element
101
vasculature
99
blood vessel
83
brain
67
artery
34
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
233
AMP
1
T1D
Genome assembly (visualization)
85
hg19
74
GRCh38
Lab
233
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
bedpe bed3+
BIOSAMPLE
ASSAY
234 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
tissue
bone element
84
bone tissue
58
brain
1
9
1
1
cingulate gyrus
7
layer of hippocampus
6
+ See 30 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 2 more…
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